species:   Rhsol
pid:       PID0490
parent:    Rhi-milR-163
paralog:   
locus:     KB317708.1:388298-388375
matures:   ['UUGACCAUGGAGACUGCUUGUG', 'AUGAAGGAGAUCUUCUGGUUGAGG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317708.1:388298-388375

15 out of bounds
13 alignments
13 proper strand
11 stranded perfect matches

        *************************       ***************************           
CUAGAAGCAGUUGACCAUGGAGACUGCUUGUGCUAGCUAAGUUAUGAAGGAGAUCUUCUGGUUGAGGGAGUUUGGCAU
(((((..(..(((((((.(((((((.(((..(((.....)))....))).)).))))))))))))..)..)))))...
----------UUGACCAUGGAGACUGCUUGUG---------------------------------------------- l=22 a=0 c
-------------------------------------------AUGAAGGAGAUCUUCUGGUUGAGG----------- l=24 a=0 c*
----------UUGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=23 a=4 ma
------------------------------------------UAUGAAGGAGAUCUUCUGGUUGAGG----------- l=25 a=0 ma*

----------UUGACCAUGGAGACUGCUUGU----------------------------------------------- l=21 a=1 
----------UUGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=23 a=4 (ma)
----------UUGACCAUGGAGACUGCUUGUGCUAG------------------------------------------ l=26 a=1 
-----------UGACCAUGGAGACUGCUUGU----------------------------------------------- l=20 a=1 
-----------UGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=22 a=1 
-----------UGACCAUGGAGACUGCUUGUGCUAG------------------------------------------ l=25 a=1 
-----------------aGGAGACUGCUUGUGCUAGCUAAG------------------------------------- l=24 a=1 
--------------------------------------------UGAAGGAGAUCUUCUGGUUGAGGG---------- l=24 a=1 
-----------------------------------------------AGGAGAUCUUCUGGUUGAGGG---------- l=21 a=1 
-----------------------------------------------AGGAGAUCUUCUGGUUGAGGGu--------- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-111111101100
fn-111
